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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38372566_38373260_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38372566 - 38373260
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
TCCTCCTTGACC
Flanking Amino Acid:
LHLREQRLLHGEVNDNALLD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.5
41.9
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
84.4
0.77
0.7
76.2
32.4
Minor 5ss
36.1
-1.6
3
47.2
43.4
Minor BPS
78.2
0.87
1.2
77.61
39

Associated Gene:

Gene:
CYTIP
Ensembl Gene ID:
ENSAPLG00000010293
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010746
38371692 - 38381396
9705