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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38373328_38375488_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38373328 - 38375488
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
TTATCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCCTTCACA
Flanking Amino Acid:
ELETKLQLLKKTLQQKWVEF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.6
0.71
0.8
76.3
32
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
75.7
0.8
1.7
84.37
35.6

Associated Gene:

Gene:
CYTIP
Ensembl Gene ID:
ENSAPLG00000010293
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010746
38371692 - 38381396
9705