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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38375559_38375862_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38375559 - 38375862
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCCAA
U12 Branch Point Sequence:
GGTACCCAAAGA
Flanking Amino Acid:
DLIKSSGNYLRLETVNGAMY
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
55.3
0.13
1.2
64.7
33.6
Major PPT
85
0.79
0.7
76.7
32
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
42.8
-0.5
2.2
54.58
43.4

Associated Gene:

Gene:
CYTIP
Ensembl Gene ID:
ENSAPLG00000010293
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010746
38371692 - 38381396
9705