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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38376230_38378448_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38376230 - 38378448
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTGTTATTACA
Flanking Amino Acid:
DKETFGFEIQTIRFPNQNDY
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
48.1
-0.1
2
67.22
39.2

Associated Gene:

Gene:
CYTIP
Ensembl Gene ID:
ENSAPLG00000010293
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010746
38371692 - 38381396
9705