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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38378504_38378718_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38378504 - 38378718
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
SSLGDSSRPQRHLVAIFKDD
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.7
40.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
87
0.83
0.8
80.7
31.5
Minor 5ss
31.4
-2.1
3.1
40.2
45.5
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
CYTIP
Ensembl Gene ID:
ENSAPLG00000010293
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010746
38371692 - 38381396
9705