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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38396344_38396617_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38396344 - 38396617
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTGCCCTAAACA
Flanking Amino Acid:
WEIARRCCVGGITEEYQLPY
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
67.1
0.39
0.9
58.9
41.8
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
61.8
0.37
1.7
69.71
42.3

Associated Gene:

Gene:
ACVR1C
Ensembl Gene ID:
ENSAPLG00000005547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005730
38395259 - 38424973
29715