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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38440094_38440872_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38440094 - 38440872
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTC
Flanking Amino Acid:
NIPNRWFSDPTLTSLAKLMK
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.8
76.9
36.6
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
66.7
0.5
1.5
74.49
36.5

Associated Gene:

Gene:
ACVR1
Ensembl Gene ID:
ENSAPLG00000004767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004960
38439959 - 38504079
64121
ENSAPLT00000036065
38439959 - 38493852
53894
ENSAPLT00000021959
38439959 - 38487546
47588