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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38447313_38451000_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38447313 - 38451000
Intron Length:
3688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GGGGATTTAACT
Flanking Amino Acid:
KNGQCCIADLGLAVMHSQST
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.9
0.61
0.9
76.1
37.8
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
53.7
0.19
1.7
66.25
44.2

Associated Gene:

Gene:
ACVR1
Ensembl Gene ID:
ENSAPLG00000004767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004960
38439959 - 38504079
64121
ENSAPLT00000036065
38439959 - 38493852
53894
ENSAPLT00000021959
38439959 - 38487546
47588