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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38460905_38461392_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38460905 - 38461392
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTCTCAAACT
Flanking Amino Acid:
NITAQLPSSKGQTLQGEAAG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.4
0.57
1
74.9
33.7
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
54.2
0.21
2
76.29
40.1

Associated Gene:

Gene:
ACVR1
Ensembl Gene ID:
ENSAPLG00000004767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036065
38439959 - 38493852
53894
ENSAPLT00000021959
38439959 - 38487546
47588
ENSAPLT00000004960
38439959 - 38504079
64121