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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38461660_38468084_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38461660 - 38468084
Intron Length:
6425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAACT
Flanking Amino Acid:
LLALPPRSVQDDELKLNMVH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.4
0.84
0.7
82.5
26.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
74.5
0.85
1.5
87.74
37.8

Associated Gene:

Gene:
ACVR1
Ensembl Gene ID:
ENSAPLG00000004767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036065
38439959 - 38493852
53894
ENSAPLT00000021959
38439959 - 38487546
47588
ENSAPLT00000004960
38439959 - 38504079
64121