Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38468159_38487511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38468159 - 38487511

Intron Length:

19353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGCGAG

5'SS Class:

major

3'SS Sequence:

TCTCTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAA

U12 Branch Point Sequence:

CAGCTCTCAAGT

Flanking Amino Acid:

PAREPSPLLPWPAMIDGVMI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

55.9

43.4

Major BPS

73.4

0.58

0.9

75.3

29.7

Major PPT

83.3

0.75

0.7

76.5

32.1

Minor 5ss

34.4

-1.8

3.6

42.2

46.3

Minor BPS

46.3

-0.2

1.8

58.21

44.7

Associated Gene:

Gene:

ACVR1

Ensembl Gene ID:

ENSAPLG00000004767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021959

38439959 - 38487546

47588