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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38468159_38493319_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
38468159 - 38493319
Intron Length:
25161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CAGCTCTCAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71
32.7
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
34.6
-1.8
3.1
44.1
43.8
Minor BPS
46.3
-0.2
1.8
58.21
44.7

Associated Gene:

Gene:
ACVR1
Ensembl Gene ID:
ENSAPLG00000004767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036065
38439959 - 38493852
53894