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Intron Name: Anas_platyrhynchos_platyrhynchos_7_38506469_38506966_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38506469 - 38506966

Intron Length:

498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAC

U12 Branch Point Sequence:

GCCCGCTCACCC

Flanking Amino Acid:

MTETTGYSGGGPVLIKNP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

38.4

Major BPS

57.5

0.19

1.1

60.7

37.6

Major PPT

0.56

0.7

24.7

Minor 5ss

-2.3

2.9

32.9

41.9

Minor BPS

40.2

-0.7

2.1

44.44

43.6

Associated Gene:

Gene:

UPP2

Ensembl Gene ID:

ENSAPLG00000004498

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004635

38506443 - 38513042

6600