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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38517225_38519467_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38517225 - 38519467
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTATG
5'SS Class:
major
3'SS Sequence:
TTTCATACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCATACTT
Flanking Amino Acid:
EKCLEALRQKVSVVAKLDPA
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
72.4
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.8
78.6
34.2
Minor 5ss
40.1
-1.1
2.7
50.7
45.8
Minor BPS
54.7
0.23
1.9
77.07
39.7

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245