About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38519586_38523869_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38519586 - 38523869
Intron Length:
4284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAGAA
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TGTTTTTCCATT
Flanking Amino Acid:
MAKQAIKDRERVKFRQALLD
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
65
34.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
29.6
-2.3
3.4
38.4
46.7
Minor BPS
48.9
-0
1.9
71.95
39.8

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245