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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38533159_38543926_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38533159 - 38543926
Intron Length:
10768

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCAGGCAAA
5'SS Class:
major
3'SS Sequence:
CTCTGGTTAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGTCAAATAACT
Flanking Amino Acid:
LFCTAKFKMNITNIWRRSVK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
61.9
42.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
66.2
0.37
1
62
38.7
Minor 5ss
29.4
-2.4
4.1
43
44.7
Minor BPS
46.7
-0.1
2
68.93
40.5

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245