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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38553252_38553335_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38553252 - 38553335
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCACA
Flanking Amino Acid:
ERQLEAYKRKALVRSSEEKT
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.7
81.1
29.3
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
60.3
0.32
2
79.79
36.3

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245