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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38553432_38553675_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38553432 - 38553675
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TTTCATGACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGACAT
Flanking Amino Acid:
KFNPVDMLQQIEFVKKQQEE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.5
0.37
1
61.7
38.8
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
48.4
-0
2.1
74.31
41.7

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245