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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38553863_38554982_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
38553863 - 38554982
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTGAGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TGCTACCTAATA
Flanking Amino Acid:
WQEHKRLRENSFMFHLDIEQ
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
50
0
1.3
52.2
45.6
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
53
0.09
1.9
65.96
40.3

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245