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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38555087_38559222_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38555087 - 38559222
Intron Length:
4136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AAATACTTAAAA
Flanking Amino Acid:
KIASAKIQLKIKKTEQISKN
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
60.7
0.33
1.6
67.06
38

Associated Gene:

Gene:
CCDC148
Ensembl Gene ID:
ENSAPLG00000004224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004343
38515083 - 38559327
44245