Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38575903_38596334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38575903 - 38596334

Intron Length:

20432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGACGCCT

5'SS Class:

major

3'SS Sequence:

TTGTTTATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ACTATTTTAAAA

Flanking Amino Acid:

SAGRGVSGPRGKMPAPEQTP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.2

63.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.3

0.82

0.8

81.8

34.6

Minor 5ss

33.5

-1.9

3.4

48.4

47.3

Minor BPS

57.5

0.23

1.4

63.05

37.2

Associated Gene:

Gene:

PKP4

Ensembl Gene ID:

ENSAPLG00000003306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022562

38575749 - 38664101

88353

ENSAPLT00000032945

38575749 - 38664101

88353