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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38596469_38609438_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38596469 - 38609438
Intron Length:
12970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGCC
5'SS Class:
major
3'SS Sequence:
TTTGAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTGAAAT
Flanking Amino Acid:
TTILASVKEQELQFQRLTRE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
68.3
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76
0.58
1
71.5
42.8
Minor 5ss
39.4
-1.2
3.1
53.2
44.1
Minor BPS
61.9
0.45
1.5
78.71
37

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000045090
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353