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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3861303_3863508_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3861303 - 3863508
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ACCTCATTAATG
Flanking Amino Acid:
TFPGPGEDGLNPFLEVRVTD
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
80.6
0.69
0.7
75.1
27
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
58.1
0.12
1.7
58.58
43.5

Associated Gene:

Gene:
MSTN
Ensembl Gene ID:
ENSAPLG00000012230
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012734
3858445 - 3863889
5445