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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38621891_38626389_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38621891 - 38626389
Intron Length:
4499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATCT
5'SS Class:
major
3'SS Sequence:
TGTATTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCATCCTAATGT
Flanking Amino Acid:
TEKSFPWRSPDPPATSVNKP
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.7
35.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
81.2
0.7
0.9
78.2
39.9
Minor 5ss
46.7
-0.3
2.8
66.5
44.4
Minor BPS
47.9
-0
2.2
68.17
48.4

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000045090
38575749 - 38664101
88353