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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38626516_38626679_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38626516 - 38626679
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
TTCATATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATTCTTACGT
Flanking Amino Acid:
YSPEQTSLHERSVGNSRSST
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.2
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.9
73.2
36.2
Minor 5ss
30
-2.3
3.7
40.9
40
Minor BPS
60.3
0.4
1.9
80
42.2

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353