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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38650949_38652409_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38650949 - 38652409
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCAACCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTCATTTCAACC
Flanking Amino Acid:
LVLRNTTGCLRNLSSAGEEA
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.7
0.47
0.8
67
35
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
50.9
0.01
1.6
59.46
39.7

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000045090
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353