Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38653202_38653343_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38653202 - 38653343

Intron Length:

142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATACCTT

5'SS Class:

major

3'SS Sequence:

GTTCACTTCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

GTTTCTTGTACT

Flanking Amino Acid:

KKKKTSQEDQWDGVGPIPGF

Intron Amino Acid Position:

833

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

67.7

43.2

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

76.6

0.6

0.9

73.2

36.9

Minor 5ss

49.2

-0

2.9

73.5

43.2

Minor BPS

61.6

0.45

1.8

81.75

39.4

Associated Gene:

Gene:

PKP4

Ensembl Gene ID:

ENSAPLG00000003306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028929

38596286 - 38664101

67816

ENSAPLT00000022562

38575749 - 38664101

88353

ENSAPLT00000045090

38575749 - 38664101

88353

ENSAPLT00000003459

38588964 - 38664101

75138

ENSAPLT00000032945

38575749 - 38664101

88353

ENSAPLT00000030373

38575749 - 38664101

88353