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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38656623_38658809_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38656623 - 38658809
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTCCTTATTT
Flanking Amino Acid:
LVNITKGRGDRSSLKVVKAA
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
82.9
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.2
0.63
0.8
77.3
31.3
Minor 5ss
24.8
-2.9
3.6
33.4
41.8
Minor BPS
76.5
0.91
1.5
89.27
35.4

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000045090
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353