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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38658895_38658995_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38658895 - 38658995
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTAC
5'SS Class:
major
3'SS Sequence:
TACCACTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCA
Flanking Amino Acid:
YRDLRSIYKKDGWNQSHFIT
Intron Amino Acid Position:
1035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.7
34.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.5
0.42
0.9
61
34.5
Minor 5ss
38.5
-1.3
3.2
51.5
45.7
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000045090
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353