Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38659114_38663224_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38659114 - 38663224

Intron Length:

4111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAA

U12 Branch Point Sequence:

ATGCCATTAAAC

Flanking Amino Acid:

NQQMSPVIQSGSSKPSPIYI

Intron Amino Acid Position:

1092

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

1.3

74.1

38.3

Major BPS

70.2

0.5

71.6

30.1

Major PPT

81.2

0.7

31.4

Minor 5ss

28.9

-2.4

2.6

32.6

Minor BPS

55.3

0.15

1.7

65.37

39.3

Associated Gene:

Gene:

PKP4

Ensembl Gene ID:

ENSAPLG00000003306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045090

38575749 - 38664101

88353