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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38661254_38662265_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38661254 - 38662265
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
ATTTTTTCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
ACFSVPEYEQVGSTSSSPAL
Intron Amino Acid Position:
1086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.8
0.74
0.9
82.9
32.8
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138