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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38662398_38663224_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38662398 - 38663224
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
ATGCCATTAAAC
Flanking Amino Acid:
DVIAHKDIYTGSSKPSPIYI
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
73.9
30.8
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
81.2
0.7
0.7
77
31.4
Minor 5ss
38.4
-1.3
3.1
47.6
42.6
Minor BPS
55.3
0.15
1.7
65.37
39.3

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030373
38575749 - 38664101
88353
ENSAPLT00000028929
38596286 - 38664101
67816
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353