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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38663299_38663852_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38663299 - 38663852
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTCTTCCACT
Flanking Amino Acid:
PAREQNRRLQHQQLYYSQED
Intron Amino Acid Position:
1155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.5
0.48
1
66.2
39.1
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
57.7
0.32
2
79.65
42.8

Associated Gene:

Gene:
PKP4
Ensembl Gene ID:
ENSAPLG00000003306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022562
38575749 - 38664101
88353
ENSAPLT00000045090
38575749 - 38664101
88353
ENSAPLT00000003459
38588964 - 38664101
75138
ENSAPLT00000032945
38575749 - 38664101
88353
ENSAPLT00000030373
38575749 - 38664101
88353
ENSAPLT00000028929
38596286 - 38664101
67816