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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38681038_38683663_R

Intron Information:

Intron Rank:
149433
Intron Class:
major
Intron Phase:
Intron Coordinates:
38681038 - 38683663
Intron Length:
2626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATTCGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.1
0.7
0.7
80.8
24.4
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
64.1
0.52
2
82.83
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027895
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042388
38673783 - 38683726
9944