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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38694400_38697622_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38694400 - 38697622
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATAAACT
Flanking Amino Acid:
CPTAARRPPAVKAGGMRVSK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
62.7
0.48
2
86.22
39.4

Associated Gene:

Gene:
DAPL1
Ensembl Gene ID:
ENSAPLG00000003302
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003358
38694324 - 38701681
7358