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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38767087_38768720_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38767087 - 38768720
Intron Length:
1634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGATAA
5'SS Class:
major
3'SS Sequence:
CTTCACACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
AHIEEKNEAMCTITSQGVSP
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
66.6
35.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
74.1
0.54
0.9
66.8
33.7
Minor 5ss
36
-1.6
3.3
43.2
46.4
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099