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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38768911_38773209_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38768911 - 38773209
Intron Length:
4299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTAATTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
TLESKDSGIIATITSSSEND
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.1
0.65
0.9
76.5
37.1
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099