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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38785936_38786159_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38785936 - 38786159
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCATTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATACTATAAAT
Flanking Amino Acid:
HHILKAHIFKGLSKRTGISS
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
70.9
0.47
1
66
40.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
52.3
0.15
1.7
71.16
38.9

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099