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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38796883_38796999_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38796883 - 38796999
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCATTACAA
Flanking Amino Acid:
LSTVEFLLSEGAAISSLDKE
Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.9
27.3
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
53.7
0.11
2
69.75
42.3

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099