About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38797176_38799606_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38797176 - 38799606
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
LAAFYGDADIVQYLVERGAM
Intron Amino Acid Position:
1205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099