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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38799740_38800588_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38799740 - 38800588
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AGATCCTTAAAA
Flanking Amino Acid:
VMLLRKGAKLGNAAWAMATS
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
79.5
0.66
0.9
75.2
39
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
71.8
0.68
1.4
73.51
37.2

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099