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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38800681_38803754_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38800681 - 38803754
Intron Length:
3074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
CCTAAATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTCCCTAAAT
Flanking Amino Acid:
LMEEGNILYKKGKMKEAAQR
Intron Amino Acid Position:
1280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.7
40.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.1
0.43
0.9
62.1
38.4
Minor 5ss
35.4
-1.7
3
41.6
39.3
Minor BPS
68.7
0.66
1.8
86.25
39.3

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099