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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38803902_38805064_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38803902 - 38805064
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTCT
5'SS Class:
major
3'SS Sequence:
TTTAAATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTGTTTAAAT
Flanking Amino Acid:
NLSRCRRKTNDFGMAEEFAT
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74.4
36.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.1
0.52
0.9
70.7
39.7
Minor 5ss
48.9
-0.1
2.8
70.6
39.6
Minor BPS
65
0.55
1.8
83.47
37.5

Associated Gene:

Gene:
TANC1
Ensembl Gene ID:
ENSAPLG00000002937
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003000
38738071 - 38805169
67099