Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38809200_38811975_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38809200 - 38811975

Intron Length:

2776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CGATTCTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GCACCTGTAATA

Flanking Amino Acid:

ELMKEPVIAADGYSYEKEAM

Intron Amino Acid Position:

425

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

83.5

35.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

79.1

0.65

0.9

72.9

37.1

Minor 5ss

46.2

-0.4

2.8

67.2

43.9

Minor BPS

46.9

-0.2

53.92

Associated Gene:

Gene:

WDSUB1

Ensembl Gene ID:

ENSAPLG00000002463

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029214

38773421 - 38828545

55125