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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38812117_38814632_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38812117 - 38814632
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TACAACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTCATG
Flanking Amino Acid:
KESLTNELKIESLGLRSKIL
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.1
0.54
0.9
69.6
40.8
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
52.3
-0
2
65.84
42

Associated Gene:

Gene:
WDSUB1
Ensembl Gene ID:
ENSAPLG00000002463
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029214
38773421 - 38828545
55125
ENSAPLT00000018293
38809722 - 38828545
18824
ENSAPLT00000002479
38773357 - 38828545
55189