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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38814813_38815651_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38814813 - 38815651
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTCCTTTACA
Flanking Amino Acid:
WQFDSKQPCAGNTVEKESEV
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68
0.41
1
70.4
33
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
76.7
0.84
1.6
83.52
37

Associated Gene:

Gene:
WDSUB1
Ensembl Gene ID:
ENSAPLG00000002463
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029214
38773421 - 38828545
55125
ENSAPLT00000018293
38809722 - 38828545
18824
ENSAPLT00000002479
38773357 - 38828545
55189
ENSAPLT00000033705
38809027 - 38828545
19519