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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38815759_38815846_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38815759 - 38815846
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATGTTAATT
Flanking Amino Acid:
NILHTLSQHTRYVTTCVFAP
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
62.2
0.46
2.1
83.96
37.3

Associated Gene:

Gene:
WDSUB1
Ensembl Gene ID:
ENSAPLG00000002463
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002479
38773357 - 38828545
55189
ENSAPLT00000033705
38809027 - 38828545
19519
ENSAPLT00000029214
38773421 - 38828545
55125
ENSAPLT00000018293
38809722 - 38828545
18824