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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38823784_38825968_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38823784 - 38825968
Intron Length:
2185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAACT
Flanking Amino Acid:
LWNVQSLKLYRSGSVKDGSL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
72
0.77
1.6
86.99
39.2

Associated Gene:

Gene:
WDSUB1
Ensembl Gene ID:
ENSAPLG00000002463
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029214
38773421 - 38828545
55125
ENSAPLT00000018293
38809722 - 38828545
18824
ENSAPLT00000002479
38773357 - 38828545
55189
ENSAPLT00000033705
38809027 - 38828545
19519