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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38829720_38834206_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38829720 - 38834206
Intron Length:
4487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTATTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTATCGTATTT
Flanking Amino Acid:
STIRDKLTSGQCSTSTKACL
Intron Amino Acid Position:
2079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
73.3
0.52
0.9
66.3
40.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
46.4
-0.1
2.2
68.69
42.7

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920