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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38835368_38837515_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38835368 - 38837515
Intron Length:
2148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATTATA
Flanking Amino Acid:
DWFCPACIAKASGQTLKIKK
Intron Amino Acid Position:
1943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.8
0.81
0.7
81.5
28.9
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
57.8
0.24
1.9
75.93
35

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920